Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
نویسندگان
چکیده
منابع مشابه
Identifying Relevant Full-Text Articles for Database Curation
In this paper, we propose an approach for identifying curatable articles from a large pool. Our system currently considers three parts of an article as three individual representations of the article, and utilizes two domain-specific resources to reveal the deep knowledge contained in the article in order to generate more representations of the article. Cross-validation is employed to find the ...
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MOTIVATION The biological literature is a major repository of knowledge. Many biological databases draw much of their content from a careful curation of this literature. However, as the volume of literature increases, the burden of curation increases. Text mining may provide useful tools to assist in the curation process. To date, the lack of standards has made it impossible to determine whethe...
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Although text mining shows considerable promise as a tool for supporting the curation of biomedical text, there is little concrete evidence as to its effectiveness. We report on three experiments measuring the extent to which curation can be speeded up with assistance from Natural Language Processing (NLP), together with subjective feedback from curators on the usability of a curation tool that...
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The emphasis of multilevel modeling techniques in the Neurosciences has led to an increased need for large-scale databases containing neuroscientific data. Despite this, such databases are not being populated at a rate commensurate with their demand amongst Computational Neuroscientists. The reasons for this are common to scientific database curation in general–limitation of resources. Much of ...
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The practice of precision medicine will ultimately require databases of genes and mutations for healthcare providers to reference in order to understand the clinical implications of each patient's genetic makeup. Although the highest quality databases require manual curation, text mining tools can facilitate the curation process, increasing accuracy, coverage, and productivity. However, to date...
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ژورنال
عنوان ژورنال: Genome Medicine
سال: 2019
ISSN: 1756-994X
DOI: 10.1186/s13073-019-0686-y